Table of Contents
Contributors vii
Preface xi
1 Understanding Gene Duplication Through Biochemistry and Population Genetics David A. Liberles Grigory Kolesov Katharina Dittmar 1
2 Functional Divergence of Duplicated Genes Takashi Makino David G. Knowles Aoife McLysaght 23
3 Duplicate Retention After Small- and Large-Scale Duplications Steven Maere Yves Van de Peer 31
4 Gene Dosage and Duplication Fyodor A. Kondrashov 57
5 Myths and Realities of Gene Duplication Austin L. Hughes Robert Friedman 77
6 Evolution After and Before Gene Duplication" Tobias Sikosek Erich Bornberg-Bauer 105
7 Protein Products of Tandem Gene Duplication: A Structural View William R. Taylor Michael I. Sadowski 133
8 Statistical Methods for Detecting Functional Divergence of Gene Families Xun Gu 163
9 Mapping Gene Gains and Losses Among Metazoan Full Genomes Using an Integrated Phylogenetic Framework Athanasia C. Tzika Raphael Helaers Michel C. Milinkovitch 173
10 Reconciling Phylogenetic Trees Oliver Eulenstein Snehalata Huzurbazar David A. Liberles 185
11 On the Energy and Material Cost of Gene Duplication Andreas Wagner 207
12 Fate of a Duplicate in a Network Context Orkun S. Soyer 215
13 Evolutionary and Functional Aspects of Genetic Redundancy Ran Kafri Tzachi Pilpel 229
14 Phylogenomic Approach to the Evolutionary Dynamics of Gene Duplication in Birds Chris L. Organ Matthew D. Rasmussen Maude W. Baldwin Manolis Kellis Scott V. Edwards 253
15 Gene and Genome Duplications in Plants Pamela S. Soltis J. Gordon Burleigh Andre S. Chanderbali Mi-Jeong Yoo Douglas E. Soltis 269
16 Whole Genome Duplications and the Radiation of Vertebrates Shigehiro Kuraku Axel Meyer 299
Index 313